Free AI-Assisted

Figure Panel Layout Generator

Plan multi-panel figure layouts with Nature, Cell, Science, and PNAS millimeter presets—drag-resize panels, auto-label A/B/C, export PDF/PNG, no account. Built-in AI agent assistant support.

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Key facts

Key facts about Figure Panel Layout Generator
FactValue
Journal presetsNature (89/128/183 mm), Cell (85/114/174 mm), Science (57/121/184 mm), PNAS (87/114/178 mm), Custom
Grid scaffold1–6 rows × 1–6 columns with outer margin (0–15 mm) and panel gutter (0–10 mm)
Layout toolsDrag-resize canvas, 3 mm snap guides, aspect locks (1:1, 4:3, 3:2, gel 1:2), scale bars, panel lock
LabelsAuto spatial A/B/C or 1/2/3; uppercase, lowercase, bold, parentheses, period; manual override
Panel typesBlot, bar chart (graph), micrograph, scatter, blank with publication color palette
ExportsPDF, Core Facility Brief PDF (shot list + legend scaffold), 300 DPI PNG/SVG, JSON template, TSV table
Runs in browserYes — pure client-side execution, no data uploaded
Account requiredNo — zero login or installation
AI assistantBuilt-in; explains fields, validates input, interprets warnings, scaffolds via API

What it does

Bench researchers often sketch multi-panel figures on paper or in PowerPoint, only to encounter manuscript rejection or tedious redesigns when panel dimensions violate journal column specifications or imaging facility crop ratios. Figure Panel Layout Generator is a zero-login browser workspace that converts journal width guidelines into an interactive millimeter canvas for planning multi-panel layouts before committing to graphic software.

Select a journal preset (Nature, Cell, Science, PNAS) or Custom dimensions, pick column width, set outer margin and panel gutter, and scaffold a row × column grid instantly. Drag-resize panels with 3 mm snap guides, lock aspect ratios (1:1, 4:3, 3:2, gel 1:2), and assign blot, bar chart, micrograph, scatter, or blank placeholders—including micrograph scale bar indicators.

The workspace formats panel labels (A/B/C or 1/2/3) with customizable styles and optional per-panel overrides. The three-column workspace provides journal controls, an interactive canvas, and a panel inspector with facility notes (100-char limit). Export standard PDFs, Core Facility Brief PDFs with shot list and legend scaffold, 300 DPI PNG/SVG, JSON templates, or copy Markdown shot lists for co-author emails.

Why researchers use it

  • Prevent manuscript rejections by enforcing official journal column-width limits automatically
  • Eliminate manual arithmetic when calculating panel dimensions and inter-panel millimeter gaps
  • Provide imaging facility managers with precise crop aspect ratios and stain notes
  • Speed up co-author review by sharing annotated PDF mockups during early drafting
  • Maintain consistent panel labeling with dynamic auto-renumbering during drag repositioning
  • Load pre-configured 2×3 Nature layouts to jumpstart multi-panel figure design

Best for

  • Drafting multi-panel main figures for Nature, Cell, Science, or PNAS submissions
  • Briefing core microscopy facility staff on required channel stains and image crop bounds
  • Prototyping asymmetric multi-panel figure arrangements before running final data analysis
  • Preparing figure layout proposals for thesis committee or lab group feedback
  • Sizing Western blot, graph, and micrograph panels within strict column boundaries

When to use this vs alternatives

Use Figure Panel Layout Generator when you need a rapid, sketch-first tool to verify physical panel millimeter dimensions and export facility crop briefs before final figure production. Switch to heavy graphic suites like Adobe Illustrator or Inkscape when vector line art, typography styling, and high-resolution raster image compositing are required. For mapping experimental logic and hypotheses rather than panel geometry, use the Hypothesis Canvas tool.

What makes it different

Traditional figure planning relies on PowerPoint slides, paper sketches, or heavy publication software that lack built-in journal column constraints, automated panel renumbering, or specialized core facility export templates. Figure Panel Layout Generator stays sketch-first: journal-accurate millimeter canvas sizes, drag-resize panels with 3 mm smart snapping, automatic A/B/C labeling, and facility-ready PDF exports without login, server storage, or plot generation complexity. Researchers switch from general presentation slides or complex graphic software because Figure Panel Layout Generator enforces journal millimeter column boundaries automatically while generating facility-ready briefing tables.

How to get started

  1. Select a journal preset (Nature, Cell, Science, PNAS, or Custom) and pick your target column width (1-column, 1.5-column, or 2-column).
  2. Enter your desired rows and columns in the grid controls, then click Scaffold grid (or click Load example to start from a 2×3 template).
  3. Drag panel edges on the millimeter canvas to adjust sizes, using 3 mm snap guides or toolbar buttons to align top, left, or equal distribution.
  4. Click any panel to open the Inspector, where you can assign panel type tags (Blot, Graph, Micrograph), lock aspect ratios, and add core facility acquisition notes.
  5. Click Export PDF, Export Core Facility Brief PDF, Export PNG, or Copy Table in the export bar to save your mockup or dimension data.

Frequently asked questions

What journal column widths are built into Figure Panel Layout Generator?
The tool includes verified guidelines for Nature (89 mm, 128 mm, 183 mm; max height 247 mm), Cell (85 mm, 114 mm, 174 mm; max height 200 mm), Science (57 mm, 121 mm, 184 mm; max height 234 mm), and PNAS (87 mm, 114 mm, 178 mm; max height 230 mm) across 1-column, 1.5-column, and 2-column layouts. Custom mode allows manual width and height inputs in millimeters.
How does automatic panel labeling and renumbering work?
Panels are sorted spatially from left-to-right and top-to-bottom across the canvas. As you drag or reposition panels, sequential labels update automatically. You can switch label formatting between Uppercase (A, B), Lowercase (a, b), Bold (A, B), Parentheses ((A), (B)), or Period (A.) styles at any time without manually typing sub-figure tags.
What is included in the Core Facility Brief PDF export?
The Core Facility Brief PDF includes your figure mockup, a shot list table (panel label, type, size, scale bar, notes), and a figure legend scaffold. Copy shot list copies the same Markdown briefing for email or facility portals.
What happens if my figure height exceeds journal limits?
If your combined panel heights and inter-panel gaps exceed the maximum allowable depth for your selected journal preset (e.g., 247 mm for Nature or 200 mm for Cell), a prominent yellow warning banner alerts you instantly. You can then reduce panel heights, adjust inter-panel spacing (0–10 mm), or select a wider multi-column layout.
Are my figure mockups and image specs stored on a server?
No. Figure Panel Layout Generator runs entirely client-side in your web browser. Your panel arrangements, sample notes, and dimension tables remain completely private. No manuscript drafts, image tags, or layout data are transmitted to or saved on external servers.
Can I use ChatGPT, Cursor, or another AI agent with Figure Panel Layout Generator?
Yes. The built-in workspace assistant can explain inspector controls, validate panel dimensions, and fill grid fields directly. External AI agents can also interact programmatically via [API & MCP](/tools/developers) using tool ID pepkio_figure-panel-mockup-grid to scaffold layouts, align panels, or export TSV dimension tables into automated publication workflows.

Client source code & registry

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